diff --git a/tests/integration/run_tests.rs b/tests/integration/run_tests.rs
index b3ad15c813..db83acb19d 100644
--- a/tests/integration/run_tests.rs
+++ b/tests/integration/run_tests.rs
@@ -926,9 +926,7 @@ fn lock_redirects() {
   );
 }
 
-// TODO(2.0): this should be rewritten to a spec test and first run `deno install`
 #[test]
-#[ignore]
 fn lock_deno_json_package_json_deps() {
   let context = TestContextBuilder::new()
     .use_temp_cwd()
@@ -942,6 +940,7 @@ fn lock_deno_json_package_json_deps() {
 
   // add a jsr and npm dependency
   deno_json.write_json(&json!({
+    "nodeModulesDir": "auto",
     "imports": {
       "esm-basic": "npm:@denotest/esm-basic",
       "module_graph": "jsr:@denotest/module-graph@1.4",
@@ -984,6 +983,7 @@ fn lock_deno_json_package_json_deps() {
   // now remove the npm dependency from the deno.json and move
   // it to a package.json that uses an alias
   deno_json.write_json(&json!({
+    "nodeModulesDir": "auto",
     "imports": {
       "module_graph": "jsr:@denotest/module-graph@1.4",
     }
@@ -1060,7 +1060,9 @@ fn lock_deno_json_package_json_deps() {
   }));
 
   // now remove the deps from the deno.json
-  deno_json.write("{}");
+  deno_json.write_json(&json!({
+    "nodeModulesDir": "auto"
+  }));
   main_ts.write("");
   context
     .new_command()